DASHR v2.0 data summary
We categorized all 802 small RNA sequencing experiments integrated into DASHR v2.0 into four data collections:
- DASHR1-GEO data collection-consists of 197 smRNA-seq datasets from DASHR v1.0(1);
- DASHR2-GEO data collection-consists of 365 new Illumina smRNA-seq experiments curated from GEO/SRA;
- ENCODE-GEO data collection –consists of all 72 short total RNA sequencing experiments (whole-cell) available in ENCODE transcriptome data (GSE24565);
- ENCODE-portal data collection -consists of all 168 smallRNA-seq experiments in ENCODE portal.
Each of the data collections in DASHR v2.0 is available for both GRCh37/hg19 and GRCh38/hg38 reference genomes.
Note that DASHR1-GEO and DASHR2-GEO sequencing datasets are generated using the TruSeq Small RNA Library Preparation Kit (Illumina), while ENCODE datasets are generated using a different, short total RNA-seq protocol.